Molecular-biological markers for analysis of Gentoo penguin’s (Pygoscelis papua) genetic diversity from Antarctic Peninsula
- Gentoo penguin,
- genetic polymorphism
The estimation of genetic polymorphism of Gentoo penguin (Pygoscelis papua) by RAPD markers has been carried out. RAPD analysis was used to examine the extent of genetic polymorphism in two populations of Gentoo penguin (Pygoscelis papua) from Antarctic Islands (Petermann and Livingston). RAPD-PCR analysis was carried out as the modified method of Operon. A series of random primers 10 bp each has 60-70% GC contents (OPA, OPM, OPP (Operon Technologies, Alameda, CA, USA)) (Mishta et al. 2002) and an original primer (11 mer) were used for RAPD analysis. For obtaining probes with (TTAGGG)n repeat the corresponding oligonucleotide (TTAGGG)3 and complementary them oligonucleotide (TAACCC)3 were synthesized. The primers were prepared for anneling and then ligated into pUC19 plasmid vector. The cloned fragment (450 bp.) was labeled with [α-Р32]-dCTP and DIG (digoxigenin) using forward and reverse standard primers in a polymerase chain reaction.
The chosen three 10 mer oligonucleotide primers accordingly to preliminary results showed different levels of polymorphism in Gentoo penguins at Petermann Island (from 22,6% до 42,9%) and Livingston Island (from 41,3% до 57,1%). Nei’s similarity coefficients were in range from 0,561 (when Gentoo genome profiles were compared with RAPD profiles of two related penguin species: Pygoscelis adeliae (Adelie) and Pygoscelis antarctica (Chinstrap)) to 0,928 among observed Gentoo penguin populations. Nei’s distances values ranged from 0,075 to 0,579 among the populations and species. Accordingly to the obtain results it was proved that the examined populations belong to the same subspecies Pygoscelis papua ellsworthi.
We determined the maximum (approximately 9000 bp) and the mean telomere length of Gentoo penguins approximately 6300±1256 bp for adult specimens and 8100±828,4 bp for chicks.
- Vasil`ev, V.A., Steklenev, E.P., Morozova, E.V., & Semenova, S.K. (2002). DNK-fingerprinting predstavitelej otdel`ny`x vidov, mezhrodovy`x I mezhvidovy`x gibridov rodov Bos I Bison podsemejstva Bovinae. [DNA fingerprinting of representatives of certain species, intergeneric and interspecific hybrids of the Bos and Bison genera of the Bovinae subfamily]. 38, 515–520.
- Malyuta, S.S., Dy`bkov, M.V., & Telegeev, G.D. (1996). Izuchenie polimorfizma DNK zhitelej Ukrainy`, vy`yavlyaemogo zondom na osnove faga M13. [Study of DNA polymorphism of the inhabitants of Ukraine, detected by a probe based on phage M13]. 30, 31–35.
- Maniatis, T., Frich, E`. & Se`mbruk, D. (1984). Molekulyarnoe klonirovanie. Metody` geneticheskoj inzhenerii. [Molecular cloning. Genetic engineering techniques].
- Semenova, S.K., Ilarionova, N.A., & Vasil`ev, V.A. (2002). Geneticheskij analiz i ocenka geneticheskogo raznoobraziya vostochnoevropejskix porod borzy`x sobak (Canis Familiaris L.) po danny`m RAP - markirovaniya genoma. [Genetic analysis and assessment of the genetic diversity of Eastern European breeds of greyhound dogs (Canis Familiaris L.) according to RAP - genome marking]. 38, 842–852.
- deYoung, B., Heath, M., Werner, F. et al. (2004). Challenges of modeling ocean basin ecosystems. Science, 304(5676), 1463–1466.
- Haussmann, M.F., Winkler, D. W., O'Reilly, K.M. et al. (2003). Telomeres shorten more slowly in long-lived birds and mammals than in short-lived ones. Proc Biol Sci., 270(1522), 1387–1392.
- Metcheva, R., Yurukova, L., Teodorova, S., Nikolova, E. (2006). The penguin feathers as bioindicator of Antarctica environmental state. Sci Total Environ., 362(1–3), 259–265.
- Mishra, M., Dubey, N., Totey, S.M. et al. (2002). Phylogenetic relationships and genetic polymorphisms in wild Indian mice. Biomol Eng., 18(6), 281-288.
- Nakagawa, S., Gemmell, N.J., Burke, T. (2004). Measuring vertebrate telomeres: applications and limitations. Mol Ecol., 13(9), 2523–2533.
- Roeder, A.D., Marshall, R.K., Mitchelson, A.J. et al. (2001). Gene flow on the ice: genetic differentiation among Adelie penguin colonies around Antarctica. Mol. Ecol., 10(7), 1645–1656.
- Savov, A.S., Telegeev, G.D., Bichev, S.N. et al. (2004). Sex identification of Gentoo penguins using PCR with specific primers.
- Yeh, F.C., Boyle, T., Yang, R.C. et al. (1999). POPGENE, the user friendly shareware for population genetic analysis, version 1.31. University of Alberta and Centre for International Forestry Research. P.102–120.